Some of pymatgen’s functionality is based on scientific advances / principles developed by various scientists. If you use some of these functionality in your research, you may wish to consider citing the following works:
The path finder code, which finds diffusion paths through a structure based on a given potential field, is written by the Ceder group at UC Berkeley.
Rong, Z., Kitchaev, D., Canepa, P., Huang, W., & Ceder, G. (2016). An efficient algorithm for finding the minimum energy path for cation migration in ionic materials. The Journal of Chemical Physics, 145(7), 74112. doi:10.1063/1.4960790
The surface generation code, which can automatically generate surfaces based on any crystal, and the Wulff code, which plots the Wulff shape given a crystal and surface energies, are written by the Materials Virtual Lab.
Tran, R.; Xu, Z.; Radhakrishnan, B.; Winston, D.; Sun, W.; Persson, K. A.; Ong, S. P. Surface energies of elemental crystals, Sci. Data, 2016, 3, 160080, doi:10.1038/sdata.2016.80.
and contains elements from the following publication.
Sun, W.; Ceder, G. Efficient creation and convergence of surface slabs, Surface Science, 2013, 617, 53–59, doi:10.1016/j.susc.2013.05.016.
The MIT parameter sets, which are optimized for high-throughput computing, are outlined the following work.
Jain, A.; Hautier, G.; Moore, C. J.; Ong, S. P.; Fischer, C. C.; Mueller, T.; Persson, K. A.; Ceder, G. A high-throughput infrastructure for density functional theory calculations, Comput. Mater. Sci., 2011, 50, 2295–2310, doi:10.1016/j.commatsci.2011.02.023.
The phase diagram code, in particular the grand canonical phase diagram analysis, is based on the work of Ong et al. and are used in following works.
Ong, S. P.; Wang, L.; Kang, B.; Ceder, G. Li−Fe−P−O2 Phase Diagram from First Principles Calculations, Chem. Mater., 2008, 20, 1798–1807, doi:10.1021/cm702327g. Ong, S. P.; Jain, A.; Hautier, G.; Kang, B.; Ceder, G. Thermal stabilities of delithiated olivine MPO4 (M=Fe, Mn) cathodes investigated using first principles calculations, Electrochem. commun., 2010, 12, 427–430, doi:10.1016/j.elecom.2010.01.010.
The compatibility processing, which allows mixing of GGA and GGA+U runs that have been calculated using the MaterialsProjectVaspInputSet or MITVaspInputSet, is based on the following work.
Jain, A.; Hautier, G.; Ong, S. P.; Moore, C. J.; Fischer, C. C.; Persson, K. A.; Ceder, G. Formation enthalpies by mixing GGA and GGA+U calculations, Phys. Rev. B, 2011, 84, 45115, doi:10.1103/PhysRevB.84.045115.
The matproj package contains an interface to the Materials Project REST API (Materials API). If you use data from the Materials Project, please cite the following works.
Jain, A.; Ong, S. P.; Hautier, G.; Chen, W.; Richards, W. D.; Dacek, S.; Cholia, S.; Gunter, D.; Skinner, D.; Ceder, G.; Persson, K. A. Commentary: The Materials Project: A materials genome approach to accelerating materials innovation, APL Mater., 2013, 1, 11002, doi:10.1063/1.4812323. Ong, S. P.; Cholia, S.; Jain, A.; Brafman, M.; Gunter, D.; Ceder, G.; Persson, K. a. The Materials Application Programming Interface (API): A simple, flexible and efficient API for materials data based on REpresentational State Transfer (REST) principles, Comput. Mater. Sci., 2015, 97, 209–215, doi:10.1016/j.commatsci.2014.10.037.
The symmetry package is based on the excellent spglib developed by Atz Togo. For more information, please refer to Atz Togo’s site.
This module implements an interface to the Henkelmann et al.’s excellent Fortran code for calculating a Bader charge analysis. Please cite the following.
Henkelman, G., Arnaldsson, A., & Jónsson, H. (2006). A fast and robust algorithm for Bader decomposition of charge density. Computational Materials Science, 36(3), 354–360. doi:10.1016/j.commatsci.2005.04.010
This module implements an io interface for FEFF calculations. Please acknowledge the contribution of Alan Dozier, UKY.
This implements an interface to the excellent Zeo++ code base. Please consider citing the following publications.
T.F. Willems, C.H. Rycroft, M. Kazi, J.C. Meza, and M. Haranczyk, Algorithms and tools for high-throughput geometry- based analysis of crystalline porous materials, Microporous and Mesoporous Materials, 149 (2012) 134-141, doi:10.1016/j.micromeso.2011.08.020. R.L. Martin, B. Smit, and M. Haranczyk, Addressing challenges of identifying geometrically diverse sets of crystalline porous materials, J. Chem. Information and Modelling, doi:10.1021/ci200386x.