pymatgen.io.feff.outputs module

class Eels(data)

Bases: monty.json.MSONable

Parse’eels.dat’ file.

as_dict()

Returns dict representations of Xmu object

atomic_background

energies

Returns the energies in eV.

fine_structure

static from_file(eels_dat_file=u'eels.dat')

Parse eels spectrum.

Parameters:eels_dat_file (str) – filename and path for eels.dat Returns:Eels object

total_spectrum

Returns the total eels spectrum.

class LDos(complete_dos, charge_transfer)

Bases: monty.json.MSONable

Parser for ldos files ldos01, ldos02, …..

Parameters:

• complete_dos (CompleteDos) – complete dos object
• charge_transfer (dict) – computed charge transfer between atoms dictionary

static charge_transfer_from_file(feff_inp_file, ldos_file)

Get charge transfer from file.

Parameters:

• feff_inp_file (str) – name of feff.inp file for run
• ldos_file (str) – ldos filename for run, assume consequetive order, i.e., ldos01.dat, ldos02.dat….

Returns:

dictionary of dictionaries in order of potential sites ({“p”: 0.154, “s”: 0.078, “d”: 0.0, “tot”: 0.232}, …)

charge_transfer_to_string()

returns shrage transfer as string

static from_file(feff_inp_file=u'feff.inp', ldos_file=u'ldos')

” Creates LDos object from raw Feff ldos files by by assuming they are numbered consecutively, i.e. ldos01.dat ldos02.dat…

Parameters:

• feff_inp_file (str) – input file of run to obtain structure
• ldos_file (str) – output ldos file of run to obtain dos info, etc.

class Xmu(header, parameters, absorbing_atom, data)

Bases: monty.json.MSONable

Parser for data in ‘xmu.dat’ file. The file ‘xmu.dat’ contains XANES, EXAFS or NRIXS data depending on the situation; mu, mu_0, and chi = chi * mu_0/ mu_0/(edge+50eV) as functions of absolute energy E, relative energy E − E_f and wave number k.

Parameters:

• header – Header object
• parameters – Tags object
• absorbing_atom (str/int) – absorbing atom symbol or index
• data (numpy.ndarray, Nx6) – cross_sections

Default attributes:

xmu: Photon absorption cross section of absorbing atom in material Energies: Energies of data point relative_energies: E - E_fermi wavenumber: k=sqrt(E −E_fermi) mu: The total absorption cross-section. mu0: The embedded atomic background absorption. chi: fine structure. Edge: Aborption Edge Absorbing atom: Species of absorbing atom Material: Formula of material Source: Source of structure Calculation: Type of Feff calculation performed

as_dict()

Returns dict representations of Xmu object

calc

Returns type of Feff calculation, XANES or EXAFS

chi

Returns the normalized fine structure.

e_fermi

Returns the fermi level in eV.

edge

Returns excitation edge.

energies

Returns the absolute energies in eV.

static from_file(xmu_dat_file=u'xmu.dat', feff_inp_file=u'feff.inp')

Get Xmu from file.

Parameters:

• xmu_dat_file (str) – filename and path for xmu.dat
• feff_inp_file (str) – filename and path of feff.inp input file

Returns:

Xmu object

material_formula

Returns chemical formula of material from feff.inp file

mu

Returns the total absorption cross-section.

mu0

Returns the embedded atomic background absorption.

relative_energies

Returns energy with respect to the fermi level. E - E_f

source

Returns source identification from Header file

wavenumber

Returns The wave number in units of AA^-1. k=sqrt(E −E_f) where E is the energy and E_f is the Fermi level computed from electron gas theory at the average interstitial charge density.